Fall brings crisp air, changing leaves, and a craving for warm, comforting dishes. One of the most beloved autumn sides that combines seasonal ingredients with vibrant flavor is butternut squash apple bake. This sweet and savory dish blends tender squash, juicy apples, warming spices, and crunchy nuts into a perfect side for any fall gathering or holiday feast.
Whether you’re looking to add a healthy side to your Thanksgiving spread, or just want a warm, satisfying dish to pair with roasted meats, this recipe delivers both nutrition and nostalgia. The balance of sweetness from apples and brown sugar, paired with the earthiness of butternut squash, creates a mouthwatering profile that resonates with seasonal flavors.
Similar dishes have long roots in American and European cuisines, where harvest vegetables like squash and apples were used to create dishes that were both hearty and budget-friendly. This version of butternut squash apple bake leans into that tradition while keeping things simple and accessible for modern home cooks. With just a few ingredients—like raisins, pecans, and vanilla extract—this dish becomes an unforgettable part of your autumn menu. For example, butternut squash itself is a staple vegetable rich in vitamins and antioxidants, making it both flavorful and nourishing.
When selecting apples, varieties like Gala apples are ideal for baking due to their natural sweetness and firm texture. You’ll also find that combining cinnamon and a touch of brown sugar adds depth without overwhelming the dish. On platforms like Pinterest’s fall food boards, recipes like these are celebrated for being both health-conscious and indulgent. And with warming spices like cinnamon and texture-rich pecans, the layers of flavor come together in every bite.
🏡 The origins & popularity of butternut squash apple bake
The butternut squash apple bake draws from a long tradition of combining sweet and savory elements in baked side dishes. These types of recipes were especially popular in colonial America, where root vegetables and fruits were plentiful during the fall months.
In early cookbooks from the 18th and 19th centuries, dishes mixing squash, apples, and sweeteners like maple or molasses were common on dinner tables. As the years progressed, the addition of nuts and dried fruits elevated these recipes into more complex, texture-rich casseroles.
In modern kitchens, this type of dish is enjoying a resurgence. Health-conscious cooks favor butternut squash apple bake for its whole-food ingredients, while busy families appreciate the ease of preparation. You’ll even find it featured in curated collections of healthy fall recipes, where comfort and wellness coexist.
Today, it’s a staple in Thanksgiving menus and fall potlucks, loved for its versatility and comforting flavors. Its popularity has grown alongside an increased appreciation for seasonal cooking, encouraging home chefs to return to fresh, local produce and simple cooking techniques.

🥕 Health benefits of butternut squash and apples
The appeal of this dish isn’t just in the flavor—it also offers a generous dose of nutrients. Both butternut squash and apples contribute health benefits that align perfectly with a balanced diet.
Butternut squash:
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High in vitamin A and beta-carotene, promoting eye and skin health
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A good source of vitamin C, potassium, and fiber
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Naturally low in fat and calories
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Contains antioxidants that support immune health
Gala apples:
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Packed with vitamin C and polyphenols for immune support
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Natural sugars provide sweetness without added refined sugars
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High in dietary fiber for digestive wellness
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Low glycemic index for steady energy
Using vanilla extract and cinnamon, which both have antioxidant and anti-inflammatory properties, enhances the health value of this bake. Even raisins, often overlooked, offer iron and potassium, making them a smart addition.
For anyone reducing sugar, small modifications like using less brown sugar or opting for fall food ideas with natural sweeteners can still retain the delicious quality of the dish.
🧂 Ingredient breakdown and substitution options
Let’s dive into the exact ingredients that make this dish shine. With every element bringing flavor, texture, or nutrition, the butternut squash apple bake is more than the sum of its parts.
Ingredients (Serves 6–8):
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1½ pounds butternut squash, peeled, seeded, and cubed
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2 Gala apples, peeled, cored, and diced
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1 tablespoon ground cinnamon
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1 teaspoon vanilla extract
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2 tablespoons brown sugar
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2 tablespoons butter, chopped (sub: vegan butter or coconut oil)
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½ teaspoon salt
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⅛ teaspoon black pepper
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¼ cup raisins
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¼ cup pecans, chopped
Substitution ideas:
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Apples: Swap Gala with Honeycrisp or Fuji for more tartness or firmness
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Butter: Use dairy-free options like coconut oil for a vegan version
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Brown sugar: Replace with maple syrup or coconut sugar for refined sugar-free
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Raisins: Use dried cranberries or chopped dates for a tangy twist
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Pecans: Substitute with walnuts or almonds for a different crunch
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Squash: Delicata or acorn squash can be used but may vary in texture
For those avoiding dairy, this recipe is easily made lactose-free. Simply use a plant-based butter or oil. It’s also naturally gluten-free, which makes it a perfect dish for guests with dietary restrictions.
🔪 Step-by-step instructions with tips
This dish is easy to prepare and doesn’t require complex tools—just a sharp knife, a mixing bowl, and a baking dish.
Instructions:
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Preheat oven to 375°F (190°C). Lightly grease a medium baking dish.
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Peel and cube 1½ pounds of butternut squash into bite-sized pieces.
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Peel, core, and dice 2 Gala apples. Keep pieces uniform for even baking.
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In a large bowl, combine squash and apples.
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Add spices: Sprinkle with 1 tablespoon cinnamon, 1 teaspoon vanilla extract, 2 tablespoons brown sugar, ½ teaspoon salt, and ⅛ teaspoon black pepper.
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Toss well to ensure even coating.
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Mix in ¼ cup raisins and ¼ cup chopped pecans. Stir gently.
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Transfer everything into the greased baking dish.
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Dot the top with 2 tablespoons of chopped butter.
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Cover with foil and bake for 25 minutes.
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Remove foil, gently stir, and bake uncovered for another 20–25 minutes until squash is fork-tender and apples are caramelized.
Pro tips:
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Use a microwave for 3–5 minutes to soften the squash before peeling for easier prep.
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Ensure uniform chopping to prevent uneven cooking.
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For extra caramelization, broil the dish for the last 2 minutes (watch carefully).
🥘 Popular variations and customizations
Once you’ve mastered the base recipe, you can play with various customizations to fit your preferences or dietary needs.
Creative twists:
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Add grains: Mix in cooked wild rice or quinoa before baking for added fiber and protein.
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Make it a main dish: Add cooked turkey sausage or lentils to turn it into a protein-rich meal.
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Add spices: Introduce nutmeg, clove, or cayenne pepper for depth or heat.
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Go sweet: Add a streusel topping (oats, butter, sugar) to convert it into a dessert-style casserole.
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Vegan-friendly: Use plant-based butter and omit the dairy completely.

🍗 What to serve with butternut squash apple bake
This bake is versatile and pairs well with both meat-based and vegetarian mains. Its slightly sweet, spiced profile complements savory entrées beautifully.
Best meat pairings:
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Roasted turkey breast or whole bird
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Grilled or roasted chicken thighs
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Baked turkey meatloaf
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Herb-rubbed pork tenderloin
Vegetarian pairings:
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Lentil loaf with mushroom gravy
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Kale and cranberry salad
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Roasted brussels sprouts with balsamic glaze
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Stuffed bell peppers with quinoa and black beans
It also fits beautifully on a Thanksgiving side dish table beside mashed potatoes, stuffing, and green beans.
❄️ Storage, reheating, and make-ahead tips
This dish is excellent for meal prep and can be stored and reheated easily without compromising flavor or texture.
Storage:
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Refrigerate in an airtight container for up to 4 days.
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Freeze for up to 1 month. Note: texture of squash may soften upon reheating.
Reheating:
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Oven: 350°F for 10–15 minutes until warm throughout.
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Microwave: 1–2 minutes, stirring halfway.
Make-ahead:
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Assemble the dish completely and refrigerate unbaked for up to 24 hours.
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Bring to room temperature before baking as directed.

❓ FAQs
Can you make butternut squash apple bake ahead of time?
Yes! You can prep the entire dish the day before and refrigerate it unbaked. When you’re ready, bake it as usual. This is perfect for holiday planning or weeknight meals.
Is this dish gluten-free or dairy-free?
The dish is naturally gluten-free. To make it dairy-free, use a vegan butter or coconut oil instead of dairy butter.
Can you freeze butternut squash apple bake?
Yes, it freezes well. For best results, store in an airtight container and reheat in the oven to retain texture.
What kind of apples are best for baking with squash?
Gala, Honeycrisp, or Fuji apples work best due to their firmness and natural sweetness. Avoid overly soft apples like Red Delicious.
Is this recipe sweet or savory?
It’s both. The natural sweetness from apples and raisins is balanced with cinnamon and a pinch of salt, making it a sweet-savory hybrid.
How do you peel and cube butternut squash easily?
Microwave the whole squash for 3–5 minutes to soften the skin, then use a sharp peeler and knife to cube it. This method saves time and effort.
🌿 Conclusion: The ultimate fall side dish
With the perfect balance of sweet and savory, a butternut squash apple bake brings together everything we love about fall cooking—comfort, warmth, and nutrition. Easy to prepare and endlessly adaptable, it can complement any meal, shine on a holiday table, or stand alone as a vegetarian main.
From the antioxidants in butternut squash to the fiber in Gala apples, every ingredient offers something beneficial. Whether you serve it with roasted chicken or a hearty plant-based dish, its rich flavor and seasonal appeal are sure to impress.
This recipe isn’t just about delicious food—it’s about connection, celebration, and the joy of seasonal eating.
PrintButternut Squash Apple Bake
A cozy and flavorful fall side dish made with roasted butternut squash, sweet Gala apples, warm cinnamon, and crunchy pecans.
- Prep Time: 15 minutes
- Cook Time: 45 minutes
- Total Time: 1 hour
- Yield: 8 servings 1x
- Category: Dinner
- Method: Baked
- Cuisine: American
Ingredients
1½ pounds butternut squash, peeled, seeded, and cubed (about 4 cups)
2 Gala apples, peeled, cored, and diced (about 2 cups)
1 tablespoon ground cinnamon
1 teaspoon pure vanilla extract
2 tablespoons brown sugar (or coconut sugar)
2 tablespoons butter, chopped (or vegan butter/coconut oil)
½ teaspoon salt
⅛ teaspoon ground black pepper
¼ cup raisins (or dried cranberries)
¼ cup pecans, chopped (or walnuts)
Instructions
Step 1: Preheat
Preheat your oven to 375°F (190°C). Lightly grease a medium baking dish (8×8 or 9×13 depending on depth).
Step 2: Prepare the Vegetables
Peel and cube 1½ pounds of butternut squash into even, bite-sized pieces.
Peel, core, and dice 2 Gala apples into chunks (same size as squash for even cooking).
Step 3: Mix Ingredients
In a large mixing bowl, combine the cubed squash and apples.
Sprinkle in:
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1 tablespoon cinnamon
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1 teaspoon vanilla extract
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2 tablespoons brown sugar
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½ teaspoon salt
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⅛ teaspoon black pepper
Toss everything well to coat evenly.
Step 4: Add Extras
Gently stir in:
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¼ cup raisins
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¼ cup chopped pecans
Make sure everything is well distributed throughout the mixture.
Step 5: Bake Covered
Transfer the mixture into your prepared baking dish.
Dot the top with 2 tablespoons of chopped butter or your dairy-free alternative.
Cover tightly with foil and bake for 25 minutes.
Step 6: Bake Uncovered
Remove the foil, stir the mixture gently, and bake uncovered for 20–25 more minutes, until:
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Squash is fork-tender
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Apples are soft and slightly caramelized
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Top is golden and aromatic
Notes
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Make it Vegan: Use coconut oil or dairy-free butter.
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Swap Raisins: Use dried cranberries or chopped dates for a twist.
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Add Protein: Stir in cooked turkey sausage or lentils to turn this into a main dish.
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Make Ahead: Assemble everything ahead of time and refrigerate unbaked for up to 24 hours. Bake when ready.
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Storage: Refrigerate leftovers in an airtight container for up to 4 days. Reheat in the oven or microwave.
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Freezer Friendly: Freeze for up to 1 month. Reheat in the oven for best texture.



